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(Final 2006 Standings)
| Seed | American Division | Wins | Losses | GB | Pct. |
|---|---|---|---|---|---|
| 1 | Essig Bluejays | 14 | 8 | - | .636 |
| 2 | New Ulm Brewers | 13 | 9 | 1 | .591 |
| 3 | Springfield Tigers | 12 | 10 | 2 | .545 |
| 4 | Sleepy Eye Indians | 11 | 11 | 3 | .500 |
| 5 | Searles Grizzlies | 7 | 15 | 7 | .318 |
| 6 | Gibbon Reds | 1 | 21 | 13 | .045 |
| Seed | National Division | Wins | Losses | GB | Pct. |
|---|---|---|---|---|---|
| 1 | Lamberton Long Sox | 15 | 7 | - | .682 |
| 2 | Leavenworth Orioles | 15 | 7 | - | .682 |
| 3 | St. James A's | 12 | 10 | 3 | .545 |
| 4 | Hanska Lakers | 12 | 10 | 3 | .545 |
| 5 | Stark Longhorns | 11 | 11 | 4 | .500 |
| 6 | Redwood Falls Redbirds | 9 | 13 | 6 | .409 |